RTEMS Doxygen Broken

[Joel Sherrill]

Hi

The subject says it all. Doesn't look like the POSIX APIs are even
included, CMSIS Definitions is listed 27 times with at least some not
linking to content, etc. There are other headings which appear repeatedly.
I am basically ignoring the warning messages.

Can someone please look at this and see if they can tell what's wrong.

--joel
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